BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB021F11LP1|AL427798
(870 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1800 1200 0.0
>3x_Contig1800
Length = 38778
Score = 1200 bits (584), Expect = 0.0
Identities = 793/869 (91%), Gaps = 21/869 (2%)
Strand = Plus / Plus
Query: 2 atcaacacttcttccgttacctgtctttactaccagataccgataagatacaaatagcta 61
|||||||||||||||||||||||||||||||||||||||||||||| |||||| | || |
Sbjct: 27066 atcaacacttcttccgttacctgtctttactaccagataccgataaaatacaact-gcaa 27124
Query: 62 gttctwwaggtcattacattatcrccgtgtaggmttgttcagagagasgcaacrctctga 121
||| | |||||||||||||||| ||| ||||| ||||||||||||| ||||| ||||||
Sbjct: 27125 gtt-taaaggtcattacattatcaccgagtaggattgttcagagagacgcaacactctga 27183
Query: 122 ttcattatgattcctctcggwacattggctagcaagatttggttacttaacgttttacac 181
|||||||||||||||||||| ||||||| ||| || |||||||||||||||||||||||
Sbjct: 27184 ttcattatgattcctctcggaacattgg-tag--ag-tttggttacttaacgttttacac 27239
Query: 182 attattgttccgaccttgccttttcgagtgaaagtggtttaaattgcatcawcttaatgc 241
|||||| |||||||||| |||||||| | ||||||||||||||||||||| |||||| |
Sbjct: 27240 attatt-ttccgacctt-ccttttcggg--aaagtggtttaaattgcatcaacttaat-c 27294
Query: 242 agttctatgatgattacwgattaagcttccgatatctaaagacagattttcggtactacg 301
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct: 27295 agttctatgatgattacagattaagcttccgatatctaaagacagattttcgttacta-- 27352
Query: 302 gcggttatagtacgcgcgagaagcgcagamaggcagragtttgattttttgatttaatcc 361
|| ||||||||| |||| ||||||||||| |||||| |||||||||||||||||||||||
Sbjct: 27353 gcagttatagta-gcgc-agaagcgcagaaaggcagaagtttgattttttgatttaatcc 27410
Query: 362 agktgtccagtkgtccagttggttgcaaaatgagaggtcactgcttaacaaaccgamtgc 421
|| |||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct: 27411 agttgtccagttgtccagttggttgcaaaatgagaggacactgcttaacaaaccgaatgc 27470
Query: 422 agtatgtgggaatggactkggctttatccattgggggacggamagcgctgcccgcyttga 481
||||||||| |||||||| |||||||||||||||||| ||| |||||||||||| ||||
Sbjct: 27471 agtatgtggaaatggacttagctttatccattggggga-ggaaagcgctgcccgctttga 27529
Query: 482 tgagaattaagggtaggtagtttggccgttgagakatgctagatkrcgcmggcgttgttt 541
|||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||
Sbjct: 27530 tgagaattaagggtaggtagtttggccgttgagatatgctagattacgcaggcgttgttt 27589
Query: 542 ggggatttttgattatgagktgccgtgactgcttcccwmtattgatttgcttttcgtctt 601
||||||||||||||||||| |||||| |||| ||||| ||||||||| |||||| ||||
Sbjct: 27590 ggggatttttgattatgagttgccgtaactg-ttcccaatattgattt-cttttc-tctt 27646
Query: 602 tcgtgcrtggsaagatcaggsttatcggccaggrsagctgctggcgtggatagaatgggg 661
| |||| ||| ||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct: 27647 t-gtgcatggcaagatcagg-ttatcggccaggacagctgctggcgtggatagaatgggg 27704
Query: 662 waattacagktgcmgcwctaaaggaataccagttagagttggtcagattytgttctgctt 721
|||||||| ||| || |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 27705 aaattacagttgcagctctaaaggaataccagttagagttggtcagattttgttctgctt 27764
Query: 722 tmagtyatgacgwagattaggataatggayatctragaytaatcccttkaatgttgatta 781
| ||| |||||| |||||||||||||||| |||| ||| ||||||||| |||||||||||
Sbjct: 27765 taagttatgacgaagattaggataatggatatctaagattaatcccttgaatgttgatta 27824
Query: 782 sgatctamagatctktttgacgtcagggaaatgcacttatgttcttcytttatctatatc 841
|||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 27825 ggatctaaagatctgtttgacgtcagggaaatgcacttatgttcttcctttatctatatc 27884
Query: 842 cacttatcaatttcaaaacgcatacaggg 870
|||||||||||||||||||||||||||||
Sbjct: 27885 cacttatcaatttcaaaacgcatacaggg 27913
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.42 0.718 1.35
Gapped
Lambda K H
1.42 0.718 1.35
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3275
Number of Sequences: 1807
Number of extensions: 3275
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 870
length of database: 10,358,551
effective HSP length: 16
effective length of query: 854
effective length of database: 10,329,639
effective search space: 8821511706
effective search space used: 8821511706
T: 0
A: 40
X1: 5 (10.3 bits)
X2: 14 (28.8 bits)
S1: 11 (23.1 bits)
S2: 49 (101.1 bits)